张晓君，上海交通大学生命科学技术学院研究员。研究方向：微生物分子生态学、涉及工业废水微生物处理过程微生物群落结构与功能分析、功能菌分离、功能基因的克隆、元基因组学、以及农业土壤环境的分子生态学、石油油藏微生物分子分析等方面的研究。

1990年和1995年在兰州大学生物系分别获学士和硕士学位；

2002年在中科院寒区旱区环境与工程研究所获得博士学位；

1995年-1999年，在兰州大学生物系任教（讲师）；

2002年-2004年挪威生命科学大学（现挪威生命科学大学）化学与生物技术系博士后；

2004年-2012年上海交通大学生命学院任副教授；

2006年－2007年在里昂第一大学微生物生态学实验室（UMR CNRS 5557）访问研究。

2013年- 上海交通大学生命学院，微生物代谢国家重点实验室 研究员

2006年起担任中国微生物学会环境微生物专业委员会委员，上海市微生物学会环境微生物专业委员会委员。2011年起任上海市微生物学会理事，《微生物学通报》编委， PLoS ONE、Research in Microbiology等国际SCI刊物及国内多个核心期刊的审稿人。

1. Xiaojun Zhang*, Jeseph Nesme， Pascal Simonet and Asa Frostegard. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation. Research in Microbiology, 2012，163:200-210.

2. Bing Xie, Shunzi Xiong, Shaobo Liang, Chong Hu, Xiaojun Zhang, Jun Lu.. 表演 and bacterial compositions of aged refuse reactors treating mature landfill leachate. Bioresource Technology, 2012, 103:71-77. (Joint first authors)

3. Xu W., Huang Z., Zhang X., Li Q., Lu Z., Shi J., Xu Z., Ma Y. Monitoring the microbial community during solid-state acetic acid 发酵 of Zhenjiang aromatic vinegar. Food Microbiology, 2011, 28(6):1175-1181

4. Ren H, Zhang X*, Song Z, Rupert W, Gao G, Guo S, Zhao L. Comparison of Microbial Community Compositions of Injection and Production Well Samples in a Long-term 液态水Flooded Petroleum Reservoir. PLoS One, 2011，6(8): e23258. doi:10.1371/journal.pone.0023258

5. Zhang X*，Yue S, Zhong H, Hua W, Chen R, Cao Y, and Zhao L. A diverse bacterial community in an anoxic quinoline-degrading bioreactor determined by using pyrosequencing and clone library analysis. Applied Microbial and Biotechnology, 2011, 91:425–434.

6. Wang Tingting, Zhang Xiaojun*, Zhang Menghui, Wang Linghua, Zhao Liping. Development of a fluorophore-ribosomal 脱氧核糖核酸 restriction typing method for monitoring structural shifts of microbial communities. Archives in Microbiology, 2011, 193:341–350.

7. Lu, H., Wu, W., Chen, Y., Zhang, X., Devare, M., Thies, J.E. Decomposition of Bt transgenic rice residues and response of soil microbial community in rape seed-rice cropping system. 植物界 and Soil, 2010, 336:279-290.

8. Hong X, Zhang X*, Liu B, Mao Y, Liu Y, and Zhao L. Structural differentiation of microbial communities in two efficient indole degrading bioreactors using different treatment processes. Research in Microbiology, 2010,161(8): 687-693.

9. Mao Y, Zhang X*, Xia X, Zhong H, Zhao L. Versatile aromatic compound-degrading capacity and microdiversity of Thauera strains isolated from a coking wastewater treatment bioreactor. J Ind Microbiol Biotechnol. 2010,37:927-934.

10. Zhang C, Zhang M, Wang S, Han R, Cao Y, Hua W, Mao Y, Zhang X, Pang X, Wei C, Zhao G, Chen Y, Zhao L.. Interactions between gut microbiota, host genetics, and diet relevant to development of metabolic syndromes in mice. ISME J, 2010. 4(2): 232-241. (SCI IF:5.039)

11. Wang L., Jin Y., Zhao L. , Pang X. and Zhang X*. ERIC-PCR-based strain-specific detection of 苯酚degrading bacteria in activated sludge of wastewater treatment systems. Letters in Applied Microbiology, 2009, 49：522-528.

12. Zhang X, Ma X, Wang N, Yao T. New subgroup of 拟杆菌门 and diverse microorganisms in Tibetan 高原 glacial ice provide a biological record of environmental conditions. FEMS Microb. Ecol., 2009, 67：21-29.

13. Mao Y, Zhang X*, Yan X, Liu B, Zhao L. Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment 植物界 responding to operational perturbations. J Microbiol Methods. 2008,75: 231–236.

14. Yang C, Cao G, Li Y, Zhang X, Ren H, Wang X, Feng J, Zhao L, Xu P. A Constructed Alkaline Consortium and Its 动力学 in Treating Alkaline 黑色 Liquor with Very High Pollution Load. Plos One, 2008, 3(11):e3777. 20. doi:10.1371/journal.pone.0003777.

15. Wang H, Zhang X, Zhao L, Xu Y. Analysis and comparison of the bacterial community in fermented grains during the 发酵 for two different styles of Chinese liquor. J Ind Microbiol Biotechnol., 2008, 35:603–609.

16. Yan X, Z Xu, X Feng, Y Liu, B Liu, X Zhang, C Zhu, L Zhao. Cloning of Environmental Genomic Fragments as Physical Markers for monitoring Microbial populations in Coking Wsatewater Treatment System. Microbial Ecology. 2007, 53:163-172.

17. Liu B, Zhang F, Feng X, Liu Y, Yan X, Zhang X, Wang L, Zhao L. Thauera and Azoarcus as Functionally Important Genera in a Denitrifying Quinoline Removal Bioreactor as Revealed by Microbial Community Structure Comparison. FEMS Microbiology Ecology, 2006, 55 (2): 274-286

近几年主要从事环境微生物生态学的研究工作。先后主持两项国家自然科学基金项目和863重点项目子课题、上海市国际合作项目、上海市农委重点攻关项目、教育部回国留学人员启动基金等科研项目，还承担其它横向课题。开展了对焦化废水这一难降解工业废水的微生物群落的深入研究，通过以喹啉反硝化降解反应器为模型揭示了菌群结构和特定基因组成及其变化规律；特别关注Thauera属细菌这类重要的污染物分解菌，创建了一套分析Thauera属细菌的方法，为研究重要降解功能菌奠定了良好基础；在分子标识物引导的群落内关键菌群的分离技术方面有所创新，并分离了一批反硝化降解菌，研究了这些降解菌的特性。与挪威生命科学大学合作研究农田土壤系统中反硝化菌群与氮循环关系，揭示了反硝化基因表达与调控机制。还对油藏极端环境的微生物生态学开展了探索研究，提出一些独特的观点。在国内外刊物上发表论文60余篇，其中SCI论文20余篇。获上海交通大学晨星学者、优秀教师等奖励。现任中国微生物学会环境微生物专业委员会委员，上海市微生物学会理事。